Installation

System requirements

  • Linux/Unix

  • Python >= 3.8

We recommend to create an independent conda environment for STRIDE. If users do not have conda, please install Miniconda first:

wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh

Install the stable version

Step 1 Prepare conda environment for STRIDE.

conda create -n stride python=3.8
conda activate stride

Step 2 Install STRIDE package from pypi.

pip install -U stride

Install the developing version

Step 1 Prepare conda environment for STRIDE.

conda create -n stride python=3.8
conda activate stride

Step 2 Download STRIDE package from github.

git clone https://github.com/DongqingSun96/STRIDE.git

Step 3 Install dependencies of STRIDE.

cd STRIDE
pip install -r requirements.txt

Step 4 Install STRIDE.

python setup.py install